A useful technique that I reinvent every once in a while is conditionally ignoring JUnit tests. Unit tests are supposed to be isolated, but occasionally you hit something that makes assumptions about the environment, such as code that executes a platform-specific shell command or (more commonly) an integration test that assumes the presence of a database. To keep such a test from breaking unsuspecting builds, you can @Ignore it, but that means you have to edit the code to run the test in a supported environment.
Proper Maven projects put their integration tests in a separate source folder called src/it/java and put an extra execution of the maven-surefire-plugin into their pom.xml, tied to the integration-test phase of the Maven build lifecycle. This is Maven's recommended way of setting these up. It ties in beautifully with the pre-integration-test and post-integration-test phases that can be used to set up and tear down the environmental dependencies of the integration test suite, such as initializing a database to a known state. There is nothing wrong with this approach, but it's a bit heavy handed for the simplest of cases.
In these simple situations it's easier to just keep the integration tests in the src/test/java directory and run them along with all your other tests. However, you still need a way to trigger them only when the right environment is present. This is easily dealt with by writing your own JUnit TestRunner and some custom annotations, as shown below.